IL_8EVT_103

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAG*CGCCAGUGAAAUAC

Length

18 nucleotides

Bulged bases

8EVT|1|A1|C|2479

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVT|1|A1|G|2466
8EVT|1|A1|G|2467
8EVT|1|A1|A|2468
8EVT|1|A1|G|2469
*
8EVT|1|A1|C|2476
8EVT|1|A1|G|2477
8EVT|1|A1|C|2478
8EVT|1|A1|C|2479
8EVT|1|A1|A|2480
8EVT|1|A1|G|2481
8EVT|1|A1|U|2482
8EVT|1|A1|G|2483
8EVT|1|A1|A|2484
8EVT|1|A1|A|2485
8EVT|1|A1|A|2486
8EVT|1|A1|U|2487
8EVT|1|A1|A|2488
8EVT|1|A1|C|2489

Current chains

Chain A1

25S rRNA

Nearby chains

Chain E

RPL1A isoform 1