IL_8EVT_115

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVT_115 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1049

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8EVT|1|A1|U|2835
8EVT|1|A1|C|2836
8EVT|1|A1|A|2837
8EVT|1|A1|A|2838
8EVT|1|A1|G|2839
*
8EVT|1|A1|C|2849
8EVT|1|A1|G|2850
8EVT|1|A1|A|2851
8EVT|1|A1|C|2852
8EVT|1|A1|A|2853

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AI

RPL10 isoform 1

Chain Am

Ubiquitin-60S ribosomal protein L40