IL_8EVT_146

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

8EVT|1|A1|U|3341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVT_146 not in the Motif Atlas

Geometric match to IL_3WBM_001

Geometric discrepancy: 0.2615

The information below is about IL_3WBM_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8EVT|1|A1|G|3340
8EVT|1|A1|U|3341
8EVT|1|A1|A|3342
*
8EVT|1|A1|U|3363
8EVT|1|A1|C|3364

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AW

RPL24A isoform 1