IL_8EVT_174

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AGAUAAAAAAUCAAUGUCUUCGGACUCUUUG*CAU

Length

34 nucleotides

Bulged bases

8EVT|1|B5|A|217, 8EVT|1|B5|A|218, 8EVT|1|B5|A|225, 8EVT|1|B5|G|228, 8EVT|1|B5|U|229, 8EVT|1|B5|U|231, 8EVT|1|B5|G|234, 8EVT|1|B5|A|236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVT|1|B5|A|213
8EVT|1|B5|G|214
8EVT|1|B5|A|215
8EVT|1|B5|U|216
8EVT|1|B5|A|217
8EVT|1|B5|A|218
8EVT|1|B5|A|219
8EVT|1|B5|A|220
8EVT|1|B5|A|221
8EVT|1|B5|A|222
8EVT|1|B5|U|223
8EVT|1|B5|C|224
8EVT|1|B5|A|225
8EVT|1|B5|A|226
8EVT|1|B5|U|227
8EVT|1|B5|G|228
8EVT|1|B5|U|229
8EVT|1|B5|C|230
8EVT|1|B5|U|231
8EVT|1|B5|U|232
8EVT|1|B5|C|233
8EVT|1|B5|G|234
8EVT|1|B5|G|235
8EVT|1|B5|A|236
8EVT|1|B5|C|237
8EVT|1|B5|U|238
8EVT|1|B5|C|239
8EVT|1|B5|U|240
8EVT|1|B5|U|241
8EVT|1|B5|U|242
8EVT|1|B5|G|243
*
8EVT|1|B5|C|250
8EVT|1|B5|A|251
8EVT|1|B5|U|252

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A

Chain BI

40S ribosomal protein S8-A

Chain BL

40S ribosomal protein S11-A