IL_8EVT_186

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAGGGCC*GGUCUUG

Length

14 nucleotides

Bulged bases

8EVT|1|B5|C|489, 8EVT|1|B5|G|498

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVT|1|B5|C|484
8EVT|1|B5|A|485
8EVT|1|B5|G|486
8EVT|1|B5|G|487
8EVT|1|B5|G|488
8EVT|1|B5|C|489
8EVT|1|B5|C|490
*
8EVT|1|B5|G|497
8EVT|1|B5|G|498
8EVT|1|B5|U|499
8EVT|1|B5|C|500
8EVT|1|B5|U|501
8EVT|1|B5|U|502
8EVT|1|B5|G|503

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain Be

40S ribosomal protein S30-A