IL_8EVT_191
3D structure
- PDB id
- 8EVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- G(OMG)UGCCAG*CGG(OMU)AAUUCC
- Length
- 18 nucleotides
- Bulged bases
- 8EVT|1|B5|A|579, 8EVT|1|B5|U|581, 8EVT|1|B5|U|582
- QA status
- Modified nucleotides: OMG, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8EVT|1|B5|G|561
8EVT|1|B5|OMG|562
8EVT|1|B5|U|563
8EVT|1|B5|G|564
8EVT|1|B5|C|565
8EVT|1|B5|C|566
8EVT|1|B5|A|567
8EVT|1|B5|G|568
*
8EVT|1|B5|C|575
8EVT|1|B5|G|576
8EVT|1|B5|G|577
8EVT|1|B5|OMU|578
8EVT|1|B5|A|579
8EVT|1|B5|A|580
8EVT|1|B5|U|581
8EVT|1|B5|U|582
8EVT|1|B5|C|583
8EVT|1|B5|C|584
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BD
- RPS3 isoform 1
- Chain BX
- 40S ribosomal protein S23-A
- Chain Be
- 40S ribosomal protein S30-A
- Chain EC
- TSV IRES
Coloring options: