IL_8EVT_208

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UUG*UUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVT_208 not in the Motif Atlas

Geometric match to IL_4V88_433

Geometric discrepancy: 0.1409

The information below is about IL_4V88_433

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8EVT|1|B5|U|893
8EVT|1|B5|U|894
8EVT|1|B5|G|895
*
8EVT|1|B5|U|917
8EVT|1|B5|U|918
8EVT|1|B5|A|919

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BB

RPS1A isoform 1

Chain BO

40S ribosomal protein S14-A