IL_8EVT_217

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UUUG*CGUACGUGUA

Length

14 nucleotides

Bulged bases

8EVT|1|EC|U|6836, 8EVT|1|EC|A|6849

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVT|1|EC|U|6834
8EVT|1|EC|U|6835
8EVT|1|EC|U|6836
8EVT|1|EC|G|6837
*
8EVT|1|EC|C|6846
8EVT|1|EC|G|6847
8EVT|1|EC|U|6848
8EVT|1|EC|A|6849
8EVT|1|EC|C|6850
8EVT|1|EC|G|6851
8EVT|1|EC|U|6852
8EVT|1|EC|G|6853
8EVT|1|EC|U|6854
8EVT|1|EC|A|6855

Current chains

Chain EC

TSV IRES

Nearby chains

Chain BF

Rps5p