IL_8EWB_005
3D structure
- PDB id
- 8EWB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 8EWB|1|A1|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EWB_005 not in the Motif Atlas
- Geometric match to IL_5TBW_005
- Geometric discrepancy: 0.0704
- The information below is about IL_5TBW_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8EWB|1|A1|C|31
8EWB|1|A1|U|32
8EWB|1|A1|G|33
8EWB|1|A1|A|34
8EWB|1|A1|A|35
8EWB|1|A1|C|36
8EWB|1|A1|U|37
8EWB|1|A1|U|38
*
8EWB|1|A1|A|45
8EWB|1|A1|U|46
8EWB|1|A1|C|47
8EWB|1|A1|A|48
8EWB|1|A1|A|49
8EWB|1|A1|U|50
8EWB|1|A1|A|51
8EWB|1|A1|A|52
8EWB|1|A1|G|53
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AL
- 60S ribosomal protein L13-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Aj
- 60S ribosomal protein L37-A
- Chain Ao
- 60S ribosomal protein L42-A
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