IL_8EWB_016
3D structure
- PDB id
- 8EWB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EWB_016 not in the Motif Atlas
- Homologous match to IL_8C3A_016
- Geometric discrepancy: 0.078
- The information below is about IL_8C3A_016
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8EWB|1|A1|G|404
8EWB|1|A1|U|405
8EWB|1|A1|G|406
8EWB|1|A1|A|407
8EWB|1|A1|A|408
8EWB|1|A1|A|409
8EWB|1|A1|U|410
*
8EWB|1|A4|A|13
8EWB|1|A4|C|14
8EWB|1|A4|G|15
8EWB|1|A4|G|16
8EWB|1|A4|A|17
8EWB|1|A4|U|18
8EWB|1|A4|C|19
Current chains
- Chain A1
- 25S rRNA
- Chain A4
- 5.8 S rRNA
Nearby chains
- Chain AC
- RPL4A isoform 1
- Chain AP
- 60S ribosomal protein L17-A
- Chain Ae
- RPL32 isoform 1
Coloring options: