IL_8EWB_056

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GCC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EWB_056 not in the Motif Atlas

Geometric match to IL_4V88_470

Geometric discrepancy: 0.2401

The information below is about IL_4V88_470

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8EWB|1|A1|G|1226
8EWB|1|A1|C|1227
8EWB|1|A1|C|1228
*
8EWB|1|A1|G|1281
8EWB|1|A1|G|1282
8EWB|1|A1|C|1283

Current chains

Chain A1

25S rRNA

Nearby chains

Chain Am

Ubiquitin-60S ribosomal protein L40

Chain V

60S acidic ribosomal protein P0