IL_8EWB_058

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8EWB|1|A1|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EWB_058 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.1253

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

8EWB|1|A1|G|1262
8EWB|1|A1|A|1263
8EWB|1|A1|G|1264
8EWB|1|A1|U|1265
8EWB|1|A1|G|1266
*
8EWB|1|A1|C|1275
8EWB|1|A1|U|1276
8EWB|1|A1|C|1277

Current chains

Chain A1

25S rRNA

Nearby chains

Chain Am

Ubiquitin-60S ribosomal protein L40

Chain V

60S acidic ribosomal protein P0