IL_8EWB_069

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GG*UUC

Length

5 nucleotides

Bulged bases

8EWB|1|A1|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EWB_069 not in the Motif Atlas

Geometric match to IL_2R8S_004

Geometric discrepancy: 0.2794

The information below is about IL_2R8S_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8EWB|1|A1|G|1623
8EWB|1|A1|G|1624
*
8EWB|1|A1|U|1820
8EWB|1|A1|U|1821
8EWB|1|A1|C|1822

Current chains

Chain A1

25S rRNA

Nearby chains

Chain Ag

60S ribosomal protein L34-A

Chain Ak

RPL38 isoform 1