IL_8EWB_071

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UCUUC*GGAAUAG

Length

12 nucleotides

Bulged bases

8EWB|1|A1|U|1629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWB|1|A1|U|1627
8EWB|1|A1|C|1628
8EWB|1|A1|U|1629
8EWB|1|A1|U|1630
8EWB|1|A1|C|1631
*
8EWB|1|A1|G|1811
8EWB|1|A1|G|1812
8EWB|1|A1|A|1813
8EWB|1|A1|A|1814
8EWB|1|A1|U|1815
8EWB|1|A1|A|1816
8EWB|1|A1|G|1817

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AZ

60S ribosomal protein L27-A