3D structure

PDB id
8EWB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III
Experimental method
ELECTRON MICROSCOPY
Resolution
2.87 Å

Loop

Sequence
CUG*CG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8EWB_090 not in the Motif Atlas
Homologous match to IL_8C3A_091
Geometric discrepancy: 0.2821
The information below is about IL_8C3A_091
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_05035.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
38

Unit IDs

8EWB|1|A1|C|2204
8EWB|1|A1|U|2205
8EWB|1|A1|G|2206
*
8EWB|1|A1|C|2237
8EWB|1|A1|G|2238

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AA
60S ribosomal protein L2-A
Chain B5
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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