IL_8EWB_091

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EWB_091 not in the Motif Atlas

Homologous match to IL_8C3A_092

Geometric discrepancy: 0.2249

The information below is about IL_8C3A_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58579.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8EWB|1|A1|G|2206
8EWB|1|A1|A|2207
8EWB|1|A1|A|2208
8EWB|1|A1|U|2209
8EWB|1|A1|G|2210
*
8EWB|1|A1|C|2235
8EWB|1|A1|G|2236
8EWB|1|A1|C|2237

Current chains

Chain A1

25S rRNA

Nearby chains

Chain B5

Small subunit ribosomal RNA; SSU rRNA