IL_8EWB_104

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GUGG*CCAC

Length

8 nucleotides

Bulged bases

8EWB|1|A1|A|2491

QA status

Self-complementary: GUGG,CCAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWB|1|A1|G|2463
8EWB|1|A1|U|2464
8EWB|1|A1|G|2465
8EWB|1|A1|G|2466
*
8EWB|1|A1|C|2489
8EWB|1|A1|C|2490
8EWB|1|A1|A|2491
8EWB|1|A1|C|2492

Current chains

Chain A1

25S rRNA

Nearby chains

Chain E

RPL1A isoform 1

Chain EC

Taura syndrome virus (TSV) internal ribosome entry site (IRES) RNA