IL_8EWB_105

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GGAG*CGCCAGUGAAAUAC

Length

18 nucleotides

Bulged bases

8EWB|1|A1|C|2479, 8EWB|1|A1|A|2480

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWB|1|A1|G|2466
8EWB|1|A1|G|2467
8EWB|1|A1|A|2468
8EWB|1|A1|G|2469
*
8EWB|1|A1|C|2476
8EWB|1|A1|G|2477
8EWB|1|A1|C|2478
8EWB|1|A1|C|2479
8EWB|1|A1|A|2480
8EWB|1|A1|G|2481
8EWB|1|A1|U|2482
8EWB|1|A1|G|2483
8EWB|1|A1|A|2484
8EWB|1|A1|A|2485
8EWB|1|A1|A|2486
8EWB|1|A1|U|2487
8EWB|1|A1|A|2488
8EWB|1|A1|C|2489

Current chains

Chain A1

25S rRNA

Nearby chains

Chain E

RPL1A isoform 1

Chain EC

Taura syndrome virus (TSV) internal ribosome entry site (IRES) RNA