IL_8EWB_139

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

8EWB|1|A1|U|3198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EWB_139 not in the Motif Atlas

Geometric match to IL_5J7L_298

Geometric discrepancy: 0.1647

The information below is about IL_5J7L_298

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8EWB|1|A1|C|3193
8EWB|1|A1|C|3194
*
8EWB|1|A1|G|3197
8EWB|1|A1|U|3198
8EWB|1|A1|G|3199

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AH

60S ribosomal protein L9-A

Chain AM

60S ribosomal protein L14-A

Chain AO

60S ribosomal protein L16-A