IL_8EWB_140
3D structure
- PDB id
- 8EWB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- CAACG*UUG
- Length
- 8 nucleotides
- Bulged bases
- 8EWB|1|A1|U|3259
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EWB_140 not in the Motif Atlas
- Homologous match to IL_8C3A_133
- Geometric discrepancy: 0.1474
- The information below is about IL_8C3A_133
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60154.1
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
8EWB|1|A1|C|3225
8EWB|1|A1|A|3226
8EWB|1|A1|A|3227
8EWB|1|A1|C|3228
8EWB|1|A1|G|3229
*
8EWB|1|A1|U|3258
8EWB|1|A1|U|3259
8EWB|1|A1|G|3260
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AE
- 60S ribosomal protein L6-A
- Chain AM
- 60S ribosomal protein L14-A
- Chain AO
- 60S ribosomal protein L16-A
- Chain Af
- 60S ribosomal protein L33-A
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