IL_8EWB_172
3D structure
- PDB id
- 8EWB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- UUAUUU*AUUCA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EWB_172 not in the Motif Atlas
- Homologous match to IL_4V88_393
- Geometric discrepancy: 0.1242
- The information below is about IL_4V88_393
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37842.2
- Basepair signature
- cWW-cWW-L-R-cWW-cWW-R-L
- Number of instances in this motif group
- 4
Unit IDs
8EWB|1|B5|U|117
8EWB|1|B5|U|118
8EWB|1|B5|A|119
8EWB|1|B5|U|120
8EWB|1|B5|U|121
8EWB|1|B5|U|122
*
8EWB|1|B5|A|295
8EWB|1|B5|U|296
8EWB|1|B5|U|297
8EWB|1|B5|C|298
8EWB|1|B5|A|299
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BE
- 40S ribosomal protein S4-A
- Chain BI
- 40S ribosomal protein S8-A
Coloring options: