3D structure

PDB id
8EWB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III
Experimental method
ELECTRON MICROSCOPY
Resolution
2.87 Å

Loop

Sequence
GUG*CC
Length
5 nucleotides
Bulged bases
8EWB|1|B5|U|1052
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8EWB_215 not in the Motif Atlas
Homologous match to IL_4V88_439
Geometric discrepancy: 0.3756
The information below is about IL_4V88_439
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_83039.19
Basepair signature
cWW-L-cWW
Number of instances in this motif group
123

Unit IDs

8EWB|1|B5|G|1051
8EWB|1|B5|U|1052
8EWB|1|B5|G|1053
*
8EWB|1|B5|C|1066
8EWB|1|B5|C|1067

Current chains

Chain B5
18S rRNA

Nearby chains

Chain BA
40S ribosomal protein S0-A
Chain BB
RPS1A isoform 1
Chain BR
40S ribosomal protein S17-A
Chain Bb
40S ribosomal protein S27-A

Coloring options:


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