IL_8EWB_231
3D structure
- PDB id
- 8EWB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- CUAC*GAG
- Length
- 7 nucleotides
- Bulged bases
- 8EWB|1|B5|U|1340
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EWB_231 not in the Motif Atlas
- Homologous match to IL_4V88_455
- Geometric discrepancy: 0.1652
- The information below is about IL_4V88_455
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
8EWB|1|B5|C|1339
8EWB|1|B5|U|1340
8EWB|1|B5|A|1341
8EWB|1|B5|C|1342
*
8EWB|1|B5|G|1383
8EWB|1|B5|A|1384
8EWB|1|B5|G|1385
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BQ
- 40S ribosomal protein S16-A
- Chain BR
- 40S ribosomal protein S17-A
- Chain BU
- RPS20 isoform 1
- Chain Bg
- Guanine nucleotide-binding protein subunit beta-like protein
Coloring options: