IL_8EWB_232

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

AAAUA*UUCUU

Length

10 nucleotides

Bulged bases

8EWB|1|B5|A|1346, 8EWB|1|B5|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWB|1|B5|A|1344
8EWB|1|B5|A|1345
8EWB|1|B5|A|1346
8EWB|1|B5|U|1347
8EWB|1|B5|A|1348
*
8EWB|1|B5|U|1377
8EWB|1|B5|U|1378
8EWB|1|B5|C|1379
8EWB|1|B5|U|1380
8EWB|1|B5|U|1381

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BD

RPS3 isoform 1

Chain BQ

40S ribosomal protein S16-A

Chain BU

RPS20 isoform 1

Chain Bg

Guanine nucleotide-binding protein subunit beta-like protein