IL_8EWB_238

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EWB_238 not in the Motif Atlas

Homologous match to IL_4V88_462

Geometric discrepancy: 0.1432

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8EWB|1|B5|G|1540
8EWB|1|B5|G|1541
8EWB|1|B5|G|1542
8EWB|1|B5|A|1543
8EWB|1|B5|U|1544
8EWB|1|B5|A|1545
*
8EWB|1|B5|U|1566
8EWB|1|B5|U|1567
8EWB|1|B5|C|1568
8EWB|1|B5|A|1569
8EWB|1|B5|A|1570
8EWB|1|B5|C|1571

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BS

40S ribosomal protein S18-A

Chain BT

40S ribosomal protein S19-A