IL_8EWB_269

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GAUACAGGGCC*GGUCUUGUAAUU

Length

23 nucleotides

Bulged bases

8EWB|1|B5|G|498, 8EWB|1|B5|U|499, 8EWB|1|B5|C|500, 8EWB|1|B5|U|502, 8EWB|1|B5|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWB|1|B5|G|480
8EWB|1|B5|A|481
8EWB|1|B5|U|482
8EWB|1|B5|A|483
8EWB|1|B5|C|484
8EWB|1|B5|A|485
8EWB|1|B5|G|486
8EWB|1|B5|G|487
8EWB|1|B5|G|488
8EWB|1|B5|C|489
8EWB|1|B5|C|490
*
8EWB|1|B5|G|497
8EWB|1|B5|G|498
8EWB|1|B5|U|499
8EWB|1|B5|C|500
8EWB|1|B5|U|501
8EWB|1|B5|U|502
8EWB|1|B5|G|503
8EWB|1|B5|U|504
8EWB|1|B5|A|505
8EWB|1|B5|A|506
8EWB|1|B5|U|507
8EWB|1|B5|U|508

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain Be

40S ribosomal protein S30-A