IL_8EWB_272

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GCUAACCUUGAGUCC*GCUCUUGGCGAAC

Length

28 nucleotides

Bulged bases

8EWB|1|B5|A|707, 8EWB|1|B5|C|709, 8EWB|1|B5|U|711, 8EWB|1|B5|G|712, 8EWB|1|B5|U|715, 8EWB|1|B5|C|716, 8EWB|1|B5|C|724, 8EWB|1|B5|U|727, 8EWB|1|B5|C|731, 8EWB|1|B5|G|732, 8EWB|1|B5|A|733, 8EWB|1|B5|A|734

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWB|1|B5|G|703
8EWB|1|B5|C|704
8EWB|1|B5|U|705
8EWB|1|B5|A|706
8EWB|1|B5|A|707
8EWB|1|B5|C|708
8EWB|1|B5|C|709
8EWB|1|B5|U|710
8EWB|1|B5|U|711
8EWB|1|B5|G|712
8EWB|1|B5|A|713
8EWB|1|B5|G|714
8EWB|1|B5|U|715
8EWB|1|B5|C|716
8EWB|1|B5|C|717
*
8EWB|1|B5|G|723
8EWB|1|B5|C|724
8EWB|1|B5|U|725
8EWB|1|B5|C|726
8EWB|1|B5|U|727
8EWB|1|B5|U|728
8EWB|1|B5|G|729
8EWB|1|B5|G|730
8EWB|1|B5|C|731
8EWB|1|B5|G|732
8EWB|1|B5|A|733
8EWB|1|B5|A|734
8EWB|1|B5|C|735

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A