IL_8EWB_279

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CAUGUAUUGGUUACCCAUC*GUAAGGCUUUCAUG

Length

33 nucleotides

Bulged bases

8EWB|1|EC|A|6769, 8EWB|1|EC|U|6770, 8EWB|1|EC|G|6773, 8EWB|1|EC|U|6774, 8EWB|1|EC|U|6775, 8EWB|1|EC|C|6777, 8EWB|1|EC|C|6778, 8EWB|1|EC|A|6817, 8EWB|1|EC|G|6819, 8EWB|1|EC|U|6822

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWB|1|EC|C|6764
8EWB|1|EC|A|6765
8EWB|1|EC|U|6766
8EWB|1|EC|G|6767
8EWB|1|EC|U|6768
8EWB|1|EC|A|6769
8EWB|1|EC|U|6770
8EWB|1|EC|U|6771
8EWB|1|EC|G|6772
8EWB|1|EC|G|6773
8EWB|1|EC|U|6774
8EWB|1|EC|U|6775
8EWB|1|EC|A|6776
8EWB|1|EC|C|6777
8EWB|1|EC|C|6778
8EWB|1|EC|C|6779
8EWB|1|EC|A|6780
8EWB|1|EC|U|6781
8EWB|1|EC|C|6782
*
8EWB|1|EC|G|6814
8EWB|1|EC|U|6815
8EWB|1|EC|A|6816
8EWB|1|EC|A|6817
8EWB|1|EC|G|6818
8EWB|1|EC|G|6819
8EWB|1|EC|C|6820
8EWB|1|EC|U|6821
8EWB|1|EC|U|6822
8EWB|1|EC|U|6823
8EWB|1|EC|C|6824
8EWB|1|EC|A|6825
8EWB|1|EC|U|6826
8EWB|1|EC|G|6827

Current chains

Chain EC

Taura syndrome virus (TSV) internal ribosome entry site (IRES) RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain E

RPL1A isoform 1