IL_8EWB_280

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GGCCGU*GUGCGGU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWB|1|A1|G|172
8EWB|1|A1|G|173
8EWB|1|A1|C|174
8EWB|1|A1|C|175
8EWB|1|A1|G|176
8EWB|1|A1|U|177
*
8EWB|1|A1|G|239
8EWB|1|A1|U|240
8EWB|1|A1|G|241
8EWB|1|A1|C|242
8EWB|1|A1|G|243
8EWB|1|A1|G|244
8EWB|1|A1|U|245

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AL

60S ribosomal protein L13-A

Chain Ah

60S ribosomal protein L35-A

Chain Aj

60S ribosomal protein L37-A