IL_8EWC_005
3D structure
- PDB id
- 8EWC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 8EWC|1|A1|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EWC_005 not in the Motif Atlas
- Homologous match to IL_8C3A_005
- Geometric discrepancy: 0.0632
- The information below is about IL_8C3A_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8EWC|1|A1|C|31
8EWC|1|A1|U|32
8EWC|1|A1|G|33
8EWC|1|A1|A|34
8EWC|1|A1|A|35
8EWC|1|A1|C|36
8EWC|1|A1|U|37
8EWC|1|A1|U|38
*
8EWC|1|A1|A|45
8EWC|1|A1|U|46
8EWC|1|A1|C|47
8EWC|1|A1|A|48
8EWC|1|A1|A|49
8EWC|1|A1|U|50
8EWC|1|A1|A|51
8EWC|1|A1|A|52
8EWC|1|A1|G|53
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AL
- 60S ribosomal protein L13-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Aj
- 60S ribosomal protein L37-A
- Chain Ao
- 60S ribosomal protein L42-A
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