IL_8EWC_010

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

UUG*CUUUGUAA

Length

11 nucleotides

Bulged bases

8EWC|1|A1|U|248, 8EWC|1|A1|U|249, 8EWC|1|A1|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWC|1|A1|U|168
8EWC|1|A1|U|169
8EWC|1|A1|G|170
*
8EWC|1|A1|C|247
8EWC|1|A1|U|248
8EWC|1|A1|U|249
8EWC|1|A1|U|250
8EWC|1|A1|G|251
8EWC|1|A1|U|252
8EWC|1|A1|A|253
8EWC|1|A1|A|254

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AL

60S ribosomal protein L13-A

Chain Ah

60S ribosomal protein L35-A