IL_8EWC_023

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GAAUGUAGCU*AGUAUUAUAGC

Length

21 nucleotides

Bulged bases

8EWC|1|A1|U|534, 8EWC|1|A1|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWC|1|A1|G|531
8EWC|1|A1|A|532
8EWC|1|A1|A|533
8EWC|1|A1|U|534
8EWC|1|A1|G|535
8EWC|1|A1|U|536
8EWC|1|A1|A|537
8EWC|1|A1|G|538
8EWC|1|A1|C|539
8EWC|1|A1|U|540
*
8EWC|1|A1|A|551
8EWC|1|A1|G|552
8EWC|1|A1|U|553
8EWC|1|A1|A|554
8EWC|1|A1|U|555
8EWC|1|A1|U|556
8EWC|1|A1|A|557
8EWC|1|A1|U|558
8EWC|1|A1|A|559
8EWC|1|A1|G|560
8EWC|1|A1|C|561

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AM

60S ribosomal protein L14-A

Chain AS

60S ribosomal protein L20