IL_8EWC_025
3D structure
- PDB id
- 8EWC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- GUUUG*CAUAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EWC_025 not in the Motif Atlas
- Homologous match to IL_5TBW_022
- Geometric discrepancy: 0.085
- The information below is about IL_5TBW_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74284.1
- Basepair signature
- cWW-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
8EWC|1|A1|G|680
8EWC|1|A1|U|681
8EWC|1|A1|U|682
8EWC|1|A1|U|683
8EWC|1|A1|G|684
*
8EWC|1|A1|C|696
8EWC|1|A1|A|697
8EWC|1|A1|U|698
8EWC|1|A1|A|699
8EWC|1|A1|C|700
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AC
- RPL4A isoform 1
- Chain AL
- 60S ribosomal protein L13-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain Aa
- 60S ribosomal protein L28
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