IL_8EWC_046

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GUUCC*GAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EWC_046 not in the Motif Atlas

Geometric match to IL_4V9F_072

Geometric discrepancy: 0.3631

The information below is about IL_4V9F_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

8EWC|1|A1|G|1013
8EWC|1|A1|U|1014
8EWC|1|A1|U|1015
8EWC|1|A1|C|1016
8EWC|1|A1|C|1017
*
8EWC|1|A1|G|1035
8EWC|1|A1|A|1036
8EWC|1|A1|C|1037

Current chains

Chain A1

25S rRNA

Nearby chains

Chain EC

internal ribosome entry site (IRES)