IL_8EWC_059

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

8EWC|1|A1|G|1236

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EWC_059 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.4562

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8EWC|1|A1|G|1234
8EWC|1|A1|U|1235
8EWC|1|A1|G|1236
8EWC|1|A1|G|1237
8EWC|1|A1|C|1238
*
8EWC|1|A1|G|1250
8EWC|1|A1|A|1251
8EWC|1|A1|A|1252
8EWC|1|A1|U|1253
8EWC|1|A1|C|1254

Current chains

Chain A1

25S rRNA

Nearby chains