IL_8EWC_102

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CAUAGAG*UUUAUAG

Length

14 nucleotides

Bulged bases

8EWC|1|A1|A|2502

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWC|1|A1|C|2444
8EWC|1|A1|A|2445
8EWC|1|A1|U|2446
8EWC|1|A1|A|2447
8EWC|1|A1|G|2448
8EWC|1|A1|A|2449
8EWC|1|A1|G|2450
*
8EWC|1|A1|U|2497
8EWC|1|A1|U|2498
8EWC|1|A1|U|2499
8EWC|1|A1|A|2500
8EWC|1|A1|U|2501
8EWC|1|A1|A|2502
8EWC|1|A1|G|2503

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AG

60S ribosomal protein L8-A

Chain Ai

60S ribosomal protein L36-A

Chain E

RPL1A isoform 1