IL_8EWC_104

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GUGUAGAAUAAG*CUAC

Length

16 nucleotides

Bulged bases

8EWC|1|A1|U|2453, 8EWC|1|A1|G|2454, 8EWC|1|A1|A|2458, 8EWC|1|A1|U|2460

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWC|1|A1|G|2452
8EWC|1|A1|U|2453
8EWC|1|A1|G|2454
8EWC|1|A1|U|2455
8EWC|1|A1|A|2456
8EWC|1|A1|G|2457
8EWC|1|A1|A|2458
8EWC|1|A1|A|2459
8EWC|1|A1|U|2460
8EWC|1|A1|A|2461
8EWC|1|A1|A|2462
8EWC|1|A1|G|2463
*
8EWC|1|A1|C|2492
8EWC|1|A1|U|2493
8EWC|1|A1|A|2494
8EWC|1|A1|C|2495

Current chains

Chain A1

25S rRNA

Nearby chains

Chain E

RPL1A isoform 1

Chain EC

internal ribosome entry site (IRES)