IL_8EWC_106

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GGAG*CGCCAGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWC|1|A1|G|2466
8EWC|1|A1|G|2467
8EWC|1|A1|A|2468
8EWC|1|A1|G|2469
*
8EWC|1|A1|C|2476
8EWC|1|A1|G|2477
8EWC|1|A1|C|2478
8EWC|1|A1|C|2479
8EWC|1|A1|A|2480
8EWC|1|A1|G|2481
8EWC|1|A1|U|2482
8EWC|1|A1|G|2483
8EWC|1|A1|A|2484
8EWC|1|A1|A|2485
8EWC|1|A1|A|2486
8EWC|1|A1|U|2487
8EWC|1|A1|A|2488
8EWC|1|A1|C|2489

Current chains

Chain A1

25S rRNA

Nearby chains

Chain E

RPL1A isoform 1

Chain EC

internal ribosome entry site (IRES)