IL_8EWC_144

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

8EWC|1|A1|U|3319

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EWC_144 not in the Motif Atlas

Geometric match to IL_4WF9_038

Geometric discrepancy: 0.3035

The information below is about IL_4WF9_038

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8EWC|1|A1|G|3318
8EWC|1|A1|U|3319
8EWC|1|A1|A|3320
*
8EWC|1|A1|U|3387
8EWC|1|A1|C|3388

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain Ad

60S ribosomal protein L31-A