IL_8EWC_187

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GAUAC*GUAAUU

Length

11 nucleotides

Bulged bases

8EWC|1|B5|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWC|1|B5|G|480
8EWC|1|B5|A|481
8EWC|1|B5|U|482
8EWC|1|B5|A|483
8EWC|1|B5|C|484
*
8EWC|1|B5|G|503
8EWC|1|B5|U|504
8EWC|1|B5|A|505
8EWC|1|B5|A|506
8EWC|1|B5|U|507
8EWC|1|B5|U|508

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain Be

40S ribosomal protein S30-A