IL_8EWC_188

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CAGGGCC*GGUCUUG

Length

14 nucleotides

Bulged bases

8EWC|1|B5|G|498

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWC|1|B5|C|484
8EWC|1|B5|A|485
8EWC|1|B5|G|486
8EWC|1|B5|G|487
8EWC|1|B5|G|488
8EWC|1|B5|C|489
8EWC|1|B5|C|490
*
8EWC|1|B5|G|497
8EWC|1|B5|G|498
8EWC|1|B5|U|499
8EWC|1|B5|C|500
8EWC|1|B5|U|501
8EWC|1|B5|U|502
8EWC|1|B5|G|503

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain Be

40S ribosomal protein S30-A