IL_8EWC_210
3D structure
- PDB id
- 8EWC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- GGGAUC*GUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EWC_210 not in the Motif Atlas
- Geometric match to IL_4V88_435
- Geometric discrepancy: 0.1205
- The information below is about IL_4V88_435
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_22046.1
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8EWC|1|B5|G|985
8EWC|1|B5|G|986
8EWC|1|B5|G|987
8EWC|1|B5|A|988
8EWC|1|B5|U|989
8EWC|1|B5|C|990
*
8EWC|1|B5|G|1014
8EWC|1|B5|U|1015
8EWC|1|B5|C|1016
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain Ap
- 60S ribosomal protein L43-A
- Chain BO
- 40S ribosomal protein S14-A
- Chain Ba
- RPS26B isoform 1
Coloring options: