IL_8EWC_256

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

UACCAUAG*CAAAAA

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWC|1|EC|U|6854
8EWC|1|EC|A|6855
8EWC|1|EC|C|6856
8EWC|1|EC|C|6857
8EWC|1|EC|A|6858
8EWC|1|EC|U|6859
8EWC|1|EC|A|6860
8EWC|1|EC|G|6861
*
8EWC|1|EC|C|6869
8EWC|1|EC|A|6870
8EWC|1|EC|A|6871
8EWC|1|EC|A|6872
8EWC|1|EC|A|6873
8EWC|1|EC|A|6874

Current chains

Chain EC

internal ribosome entry site (IRES)

Nearby chains

Chain B5

Small subunit ribosomal RNA; SSU rRNA

Chain BF

Rps5p

Chain BZ

RPS25A isoform 1