IL_8EWC_257

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CCGU*GUGCG

Length

9 nucleotides

Bulged bases

8EWC|1|A1|U|240, 8EWC|1|A1|G|241

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWC|1|A1|C|174
8EWC|1|A1|C|175
8EWC|1|A1|G|176
8EWC|1|A1|U|177
*
8EWC|1|A1|G|239
8EWC|1|A1|U|240
8EWC|1|A1|G|241
8EWC|1|A1|C|242
8EWC|1|A1|G|243

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AL

60S ribosomal protein L13-A

Chain Ah

60S ribosomal protein L35-A