IL_8EWC_266
3D structure
- PDB id
- 8EWC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- CAUAGAGGGUGUAGAAUAAG*CUACCUUUAUAG
- Length
- 32 nucleotides
- Bulged bases
- 8EWC|1|A1|U|2453, 8EWC|1|A1|G|2454, 8EWC|1|A1|U|2455, 8EWC|1|A1|A|2456, 8EWC|1|A1|A|2458, 8EWC|1|A1|U|2460, 8EWC|1|A1|A|2502
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8EWC|1|A1|C|2444
8EWC|1|A1|A|2445
8EWC|1|A1|U|2446
8EWC|1|A1|A|2447
8EWC|1|A1|G|2448
8EWC|1|A1|A|2449
8EWC|1|A1|G|2450
8EWC|1|A1|G|2451
8EWC|1|A1|G|2452
8EWC|1|A1|U|2453
8EWC|1|A1|G|2454
8EWC|1|A1|U|2455
8EWC|1|A1|A|2456
8EWC|1|A1|G|2457
8EWC|1|A1|A|2458
8EWC|1|A1|A|2459
8EWC|1|A1|U|2460
8EWC|1|A1|A|2461
8EWC|1|A1|A|2462
8EWC|1|A1|G|2463
*
8EWC|1|A1|C|2492
8EWC|1|A1|U|2493
8EWC|1|A1|A|2494
8EWC|1|A1|C|2495
8EWC|1|A1|C|2496
8EWC|1|A1|U|2497
8EWC|1|A1|U|2498
8EWC|1|A1|U|2499
8EWC|1|A1|A|2500
8EWC|1|A1|U|2501
8EWC|1|A1|A|2502
8EWC|1|A1|G|2503
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AG
- 60S ribosomal protein L8-A
- Chain Ai
- 60S ribosomal protein L36-A
- Chain E
- RPL1A isoform 1
- Chain EC
- internal ribosome entry site (IRES)
Coloring options: