IL_8EWC_270

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GCUAACCUUGA*UCUUGGCGAAC

Length

22 nucleotides

Bulged bases

8EWC|1|B5|A|707, 8EWC|1|B5|C|709, 8EWC|1|B5|U|710, 8EWC|1|B5|U|711, 8EWC|1|B5|C|726, 8EWC|1|B5|U|727, 8EWC|1|B5|U|728, 8EWC|1|B5|G|729, 8EWC|1|B5|C|731, 8EWC|1|B5|G|732, 8EWC|1|B5|A|733

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWC|1|B5|G|703
8EWC|1|B5|C|704
8EWC|1|B5|U|705
8EWC|1|B5|A|706
8EWC|1|B5|A|707
8EWC|1|B5|C|708
8EWC|1|B5|C|709
8EWC|1|B5|U|710
8EWC|1|B5|U|711
8EWC|1|B5|G|712
8EWC|1|B5|A|713
*
8EWC|1|B5|U|725
8EWC|1|B5|C|726
8EWC|1|B5|U|727
8EWC|1|B5|U|728
8EWC|1|B5|G|729
8EWC|1|B5|G|730
8EWC|1|B5|C|731
8EWC|1|B5|G|732
8EWC|1|B5|A|733
8EWC|1|B5|A|734
8EWC|1|B5|C|735

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A