IL_8EWC_275

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

(4AC)G*CA(OMG)

Length

5 nucleotides

Bulged bases

8EWC|1|B5|A|1427

QA status

Modified nucleotides: 4AC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EWC_275 not in the Motif Atlas

Homologous match to IL_8C3A_458

Geometric discrepancy: 0.119

The information below is about IL_8C3A_458

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

8EWC|1|B5|4AC|1280
8EWC|1|B5|G|1281
*
8EWC|1|B5|C|1426
8EWC|1|B5|A|1427
8EWC|1|B5|OMG|1428

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BC

RPS2 isoform 1

Chain BD

RPS3 isoform 1

Chain BQ

40S ribosomal protein S16-A

Chain BU

RPS20 isoform 1

Chain Bd

RPS29A isoform 1

Chain EC

internal ribosome entry site (IRES)