IL_8EWC_277

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GUG*UUAUC

Length

8 nucleotides

Bulged bases

8EWC|1|B5|A|1371, 8EWC|1|B5|U|1372

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWC|1|B5|G|1352
8EWC|1|B5|U|1353
8EWC|1|B5|G|1354
*
8EWC|1|B5|U|1369
8EWC|1|B5|U|1370
8EWC|1|B5|A|1371
8EWC|1|B5|U|1372
8EWC|1|B5|C|1373

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BQ

40S ribosomal protein S16-A

Chain BT

40S ribosomal protein S19-A

Chain BU

RPS20 isoform 1