IL_8EWC_278

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GGGAUAG*CUUCAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EWC_278 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.1228

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

8EWC|1|B5|G|1540
8EWC|1|B5|G|1541
8EWC|1|B5|G|1542
8EWC|1|B5|A|1543
8EWC|1|B5|U|1544
8EWC|1|B5|A|1545
8EWC|1|B5|G|1546
*
8EWC|1|B5|C|1565
8EWC|1|B5|U|1566
8EWC|1|B5|U|1567
8EWC|1|B5|C|1568
8EWC|1|B5|A|1569
8EWC|1|B5|A|1570
8EWC|1|B5|C|1571

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BS

40S ribosomal protein S18-A

Chain BT

40S ribosomal protein S19-A