IL_8EWC_280

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

UGUAUUGGUUACCCAUCU*AGUAAGGCUUUCA

Length

31 nucleotides

Bulged bases

8EWC|1|EC|A|6769, 8EWC|1|EC|U|6770, 8EWC|1|EC|U|6771, 8EWC|1|EC|U|6774, 8EWC|1|EC|U|6775, 8EWC|1|EC|A|6776, 8EWC|1|EC|C|6777, 8EWC|1|EC|C|6778, 8EWC|1|EC|G|6818, 8EWC|1|EC|U|6822

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EWC|1|EC|U|6766
8EWC|1|EC|G|6767
8EWC|1|EC|U|6768
8EWC|1|EC|A|6769
8EWC|1|EC|U|6770
8EWC|1|EC|U|6771
8EWC|1|EC|G|6772
8EWC|1|EC|G|6773
8EWC|1|EC|U|6774
8EWC|1|EC|U|6775
8EWC|1|EC|A|6776
8EWC|1|EC|C|6777
8EWC|1|EC|C|6778
8EWC|1|EC|C|6779
8EWC|1|EC|A|6780
8EWC|1|EC|U|6781
8EWC|1|EC|C|6782
8EWC|1|EC|U|6783
*
8EWC|1|EC|A|6813
8EWC|1|EC|G|6814
8EWC|1|EC|U|6815
8EWC|1|EC|A|6816
8EWC|1|EC|A|6817
8EWC|1|EC|G|6818
8EWC|1|EC|G|6819
8EWC|1|EC|C|6820
8EWC|1|EC|U|6821
8EWC|1|EC|U|6822
8EWC|1|EC|U|6823
8EWC|1|EC|C|6824
8EWC|1|EC|A|6825

Current chains

Chain EC

internal ribosome entry site (IRES)

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain E

RPL1A isoform 1